If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 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'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ), 'gf_id' => 'HOM05D000600', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000600' ), 'data_identifier' => 'HOM05D000600', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000600', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p03130' => 'bna', 'A02p36870' => 'bna', 'A02p41290' => 'bna', 'A03p07260' => 'bna', 'A03p46630' => 'bna', 'A03p46660' => 'bna', 'A05p45090' => 'bna', 'A06p06450' => 'bna', 'A06p39810' => 'bna', 'A09p07150' => 'bna', 'A09p07160' => 'bna', 'A10p23340' => 'bna', 'Aa31LG11G13960' => 'aar', 'Aa31LG11G2350' => 'aar', 'Aa31LG11G2380' => 'aar', 'Aa31LG1G5190' => 'aar', 'Aa31LG2G3820' => 'aar', 'Aa31LG5G12740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4123' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1405' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2399' => 'aag', 'Actinidia04575' => 'ach', 'Actinidia04808' => 'ach', 'Actinidia17597' => 'ach', 'Actinidia17598' => 'ach', 'Actinidia18071' => 'ach', 'Actinidia26261' => 'ach', 'Actinidia26262' => 'ach', 'Actinidia26263' => 'ach', 'Actinidia26264' => 'ach', 'Actinidia27844' => 'ach', 'Actinidia36263' => 'ach', 'Ah.02g114180' => 'amhyb', 'Ah.04g166630' => 'amhyb', 'Ah.10g038100' => 'amhyb', 'Ah.10g038110' => 'amhyb', 'Ah.11g047510' => 'amhyb', 'Ah.11g047520' => 'amhyb', 'Ah.16g101110' => 'amhyb', 'Ah.16g101120' => 'amhyb', 'AL1G20350' => 'aly', 'AL3G11460' => 'aly', 'AL5G20170' => 'aly', 'AL6G26480' => 'aly', 'AL8G37540' => 'aly', 'AL8G37570' => 'aly', 'Aqoxy316s004' => 'aox', 'Aqoxy316s005' => 'aox', 'Aqoxy3G00511' => 'aox', 'Aqoxy3G00512' => 'aox', 'Aqoxy3G03645' => 'aox', 'Aqoxy4G00471' => 'aox', 'Aqoxy6G00137' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3Y6UXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CE1GD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.59WLWN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.906G3Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9U7L2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B798EQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1AFGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F44UYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F88BV0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK15VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HB635G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH013V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K12VEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LA1S8R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9QV62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TNUB95' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8KXBE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X35DRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMS8ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3R0BI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGEY6A' => 'arhy', 'AT1G09790' => 'ath', 'AT3G02210' => 'ath', 'AT3G29810' => 'ath', 'AT5G15630' => 'ath', 'AT5G60920' => 'ath', 'AT5G60950' => 'ath', 'ATR0633G001' => 'atr', 'ATR0633G002' => 'atr', 'ATR0684G221' => 'atr', 'ATR0810G137' => 'atr', 'ATR0827G036' => 'atr', 'ATR0827G064' => 'atr', 'ATR0827G124' => 'atr', 'Atru.chr3.101' => 'acertr', 'Atru.chr5.3209' => 'acertr', 'Atru.chr6.698' => 'acertr', 'Atru.chr8.2587' => 'acertr', 'Atru.chr8.529' => 'acertr', 'Atru.chr8.530' => 'acertr', 'Atru.chr9.497' => 'acertr', 'Atru.chr9.498' => 'acertr', 'Atru.chr9.499' => 'acertr', 'Atru.chr9.500' => 'acertr', 'AUR62009493' => 'cqu', 'AUR62009494' => 'cqu', 'AUR62017116' => 'cqu', 'AUR62023171' => 'cqu', 'AUR62023172' => 'cqu', 'AUR62023173' => 'cqu', 'AUR62023174' => 'cqu', 'AUR62032116' => 'cqu', 'AUR62032117' => 'cqu', 'AUR62032120' => 'cqu', 'AUR62032121' => 'cqu', 'AUR62036469' => 'cqu', 'AUR62039659' => 'cqu', 'AUR62039660' => 'cqu', 'BcaB01g05036' => 'bca', 'BcaB04g19899' => 'bca', 'BcaB04g19901' => 'bca', 'BcaB07g30072' => 'bca', 'BcaC03g17601' => 'bca', 'BcaC03g18064' => 'bca', 'BcaC03g18066' => 'bca', 'BcaC03g18067' => 'bca', 'BcaC03g18562' => 'bca', 'BcaC04g18946' => 'bca', 'BcaC04g23469' => 'bca', 'BcaC04g23470' => 'bca', 'BcaC05g24850' => 'bca', 'BcaC05g30333' => 'bca', 'BcaC06g30855' => 'bca', 'BcaC06g33208' => 'bca', 'BcaC06g33340' => 'bca', 'BcaC06g33703' => 'bca', 'BcaC07g42512' => 'bca', 'BcaNung06751' => 'bca', 'BcaNung06907' => 'bca', 'BolC2t06711H' => 'bol', 'BolC2t11650H' => 'bol', 'BolC2t12172H' => 'bol', 'BolC3t13340H' => 'bol', 'BolC4t25572H' => 'bol', 'BolC5t29536H' => 'bol', 'BolC5t29537H' => 'bol', 'BolC5t31103H' => 'bol', 'BolC5t35099H' => 'bol', 'BolC7t44360H' => 'bol', 'BolC7t44993H' => 'bol', 'BolC7t44996H' => 'bol', 'BolC7t45164H' => 'bol', 'BolC8t47162H' => 'bol', 'BolC8t48949H' => 'bol', 'BolC8t51450H' => 'bol', 'BolC9t53714H' => 'bol', 'BolC9t53715H' => 'bol', 'BraA02t05283Z' => 'bra', 'BraA02t08679Z' => 'bra', 'BraA02t09075Z' => 'bra', 'BraA03t10048Z' => 'bra', 'BraA03t13787Z' => 'bra', 'BraA03t13790Z' => 'bra', 'BraA05t23152Z' => 'bra', 'BraA06t23856Z' => 'bra', 'BraA06t26896Z' => 'bra', 'BraA08t35345Z' => 'bra', 'BraA09t36364Z' => 'bra', 'BraA09t36365Z' => 'bra', 'BraA10t44402Z' => 'bra', 'C02p07850' => 'bna', 'C02p55920' => 'bna', 'C02p61260' => 'bna', 'C03p08340' => 'bna', 'C03p20010' => 'bna', 'C05p07850' => 'bna', 'C05p23840' => 'bna', 'C07p38330' => 'bna', 'C07p44700' => 'bna', 'C07p44730' => 'bna', 'C07p46460' => 'bna', 'C09p08000' => 'bna', 'C09p08010' => 'bna', 'C09p61480' => 'bna', 'C09p75590' => 'bna', 'CAN.G10.15' => 'can', 'CAN.G1228.1' => 'can', 'CAN.G1228.2' => 'can', 'CAN.G1228.3' => 'can', 'CAN.G135.20' => 'can', 'CAN.G143.36' => 'can', 'CAN.G1592.1' => 'can', 'CAN.G181.46' => 'can', 'CAN.G419.25' => 'can', 'CAN.G427.2' => 'can', 'CAN.G497.83' => 'can', 'CAN.G497.84' => 'can', 'CAN.G542.10' => 'can', 'CAN.G588.17' => 'can', 'CAN.G663.1' => 'can', 'CAN.G798.35' => 'can', 'CAN.G798.37' => 'can', 'CAN.G93.53' => 'can', 'CANSAT01G0153' => 'cansat', 'CANSAT11G0448' => 'cansat', 'CANSAT11G0578' => 'cansat', 'CANSAT11G1270' => 'cansat', 'CANSAT25G2879' => 'cansat', 'CANSAT64G0169' => 'cansat', 'CANSAT64G1548' => 'cansat', 'CANSAT80G0861' => 'cansat', 'CANSAT80G2594' => 'cansat', 'CARHR009760' => 'chi', 'CARHR076180' => 'chi', 'CARHR153200' => 'chi', 'CARHR197690' => 'chi', 'CARHR197700' => 'chi', 'CARHR274600' => 'chi', 'CARHR274630' => 'chi', 'Carub.0001s0913' => 'cru', 'Carub.0003s0133' => 'cru', 'Carub.0005s0835' => 'cru', 'Carub.0006s1378' => 'cru', 'Carub.0008s2161' => 'cru', 'Carub.0008s2164' => 'cru', 'Ca_00054_v3' => 'car', 'Ca_02828_v3' => 'car', 'Ca_02829_v3' => 'car', 'Ca_02837_v3' => 'car', 'Ca_15317_v3' => 'car', 'Ca_20769_v3' => 'car', 'Ca_20770_v3' => 'car', 'Ca_22733_v3' => 'car', 'Ca_22734_v3' => 'car', 'Cc00_g14150' => 'ccan', 'Cc00_g22460' => 'ccan', 'Cc00_g22470' => 'ccan', 'Cc00_g30080' => 'ccan', 'Cc00_g31960' => 'ccan', 'Cc02_g16630' => 'ccan', 'Cc02_g22890' => 'ccan', 'Cc06_g20900' => 'ccan', 'Cc11_g04690' => 'ccan', 'CDE04G0912' => 'cde', 'CDE04G0967' => 'cde', 'CDE04G2904' => 'cde', 'CDE07G0725' => 'cde', 'CDE10G0076' => 'cde', 'CDE10G0565' => 'cde', 'Cfa005488' => 'cfa', 'Cfa007681' => 'cfa', 'Cfa007682' => 'cfa', 'Cfa019359' => 'cfa', 'Cfa019360' => 'cfa', 'Cfa019361' => 'cfa', 'Ciclev10001652m.g' => 'ccl', 'Ciclev10020097m.g' => 'ccl', 'Ciclev10020292m.g' => 'ccl', 'Ciclev10021527m.g' => 'ccl', 'Ciclev10023912m.g' => 'ccl', 'Ciclev10030171m.g' => 'ccl', 'CiPaw.03G084500' => 'cil', 'CiPaw.03G084600' => 'cil', 'CiPaw.05G050900' => 'cil', 'CiPaw.06G125700' => 'cil', 'CiPaw.06G143900' => 'cil', 'CiPaw.11G055900' => 'cil', 'CiPaw.11G056000' => 'cil', 'CiPaw.12G010200' => 'cil', 'CiPaw.12G010300' => 'cil', 'ClCG02G004350' => 'cla', 'ClCG05G009430' => 'cla', 'ClCG06G015510' => 'cla', 'ClCG06G015520' => 'cla', 'ClCG07G015950' => 'cla', 'ClCG07G015960' => 'cla', 'COL.COLO4_11753' => 'col', 'COL.COLO4_12238' => 'col', 'COL.COLO4_17244' => 'col', 'COL.COLO4_24304' => 'col', 'COL.COLO4_24305' => 'col', 'COL.COLO4_24311' => 'col', 'COL.COLO4_24313' => 'col', 'COL.COLO4_24314' => 'col', 'COL.COLO4_36952' => 'col', 'Cpa.g.sc14.204' => 'cpa', 'Cpa.g.sc14.205' => 'cpa', 'Cpa.g.sc37.202' => 'cpa', 'Cpa.g.sc38.32' => 'cpa', 'Cpa.g.sc4.224' => 'cpa', 'Cpa.g.sc4.225' => 'cpa', 'CsaV3_1G003400' => 'csa', 'CsaV3_1G003410' => 'csa', 'CsaV3_1G006180' => 'csa', 'CsaV3_3G019280' => 'csa', 'CsaV3_4G010170' => 'csa', 'CsaV3_4G010180' => 'csa', 'CsaV3_7G000770' => 'csa', 'CSS0009253' => 'camsi', 'CSS0009472' => 'camsi', 'CSS0009836' => 'camsi', 'CSS0012272' => 'camsi', 'CSS0014067' => 'camsi', 'CSS0025721' => 'camsi', 'CSS0034060' => 'camsi', 'CSS0037297' => 'camsi', 'CSS0039433' => 'camsi', 'CSS0046488' => 'camsi', 'DCAR_010169' => 'dca', 'DCAR_022784' => 'dca', 'DCAR_023158' => 'dca', 'DCAR_025446' => 'dca', 'DCAR_025447' => 'dca', 'DCAR_025448' => 'dca', 'DCAR_028935' => 'dca', 'DCAR_029256' => 'dca', 'DCAR_029265' => 'dca', 'DCAR_029267' => 'dca', 'Dinv01849' => 'din', 'Dinv04975' => 'din', 'Dinv17442' => 'din', 'Dinv22759' => 'din', 'Dinv31026' => 'din', 'Dinv31077' => 'din', 'Dinv33853' => 'din', 'Dinv33854' => 'din', 'Dinv34917' => 'din', 'Dinv34918' => 'din', 'Dinv34919' => 'din', 'Duzib068G0024' => 'dzi', 'Duzib068G0604' => 'dzi', 'Duzib068G0869' => 'dzi', 'Duzib132G0562' => 'dzi', 'Duzib132G0799' => 'dzi', 'Duzib138G1679' => 'dzi', 'Duzib138G1682' => 'dzi', 'Duzib151G0131' => 'dzi', 'Duzib205G0824' => 'dzi', 'Duzib205G0912' => 'dzi', 'Duzib211G0184' => 'dzi', 'Duzib211G0487' => 'dzi', 'ECA232G2665' => 'eca', 'ECA232G4851' => 'eca', 'ECA234G0793' => 'eca', 'ECA238G1822' => 'eca', 'ECA247G2684' => 'eca', 'EL10Ac2g04452' => 'bvu', 'EL10Ac2g04453' => 'bvu', 'EL10Ac2g04454' => 'bvu', 'EL10Ac4g07553' => 'bvu', 'EL10Ac5g11166' => 'bvu', 'EL10Ac5g11167' => 'bvu', 'Eucgr.B00628' => 'egr', 'Eucgr.B00629' => 'egr', 'Eucgr.I01370' => 'egr', 'Eucgr.I02750' => 'egr', 'Eucgr.J01392' => 'egr', 'Eucgr.J01393' => 'egr', 'Eucgr.K02540' => 'egr', 'Eucgr.K02541' => 'egr', 'Eucgr.K02542' => 'egr', 'Eucgr.K02543' => 'egr', 'FAN02G0367' => 'fan', 'FAN04G2003' => 'fan', 'FAN05G2275' => 'fan', 'FAN05G3812' => 'fan', 'FAN05G4523' => 'fan', 'FAN08G0983' => 'fan', 'FAN08G1471' => 'fan', 'FAN08G2393' => 'fan', 'FAN09G2469' => 'fan', 'FAN09G3481' => 'fan', 'FAN09G3677' => 'fan', 'FAN11G0334' => 'fan', 'FAN11G0974' => 'fan', 'FAN11G2494' => 'fan', 'FAN13G0173' => 'fan', 'FAN13G1641' => 'fan', 'FAN13G2074' => 'fan', 'FAN14G0201' => 'fan', 'FAN14G1998' => 'fan', 'FAN14G3953' => 'fan', 'FAN14G5353' => 'fan', 'FAN14G5447' => 'fan', 'FAN15G2359' => 'fan', 'FAN16G2848' => 'fan', 'FAN18G0024' => 'fan', 'FAN18G1275' => 'fan', 'FAN18G1680' => 'fan', 'FAN18G2439' => 'fan', 'FAN18G3967' => 'fan', 'FAN19G0142' => 'fan', 'FAN20G2503' => 'fan', 'FAN23G1225' => 'fan', 'FAN24G0468' => 'fan', 'FAN25G1778' => 'fan', 'FAN26G0894' => 'fan', 'FAN26G1514' => 'fan', 'FvH4_1g08930' => 'fve', 'FvH4_2g02160' => 'fve', 'FvH4_3g32820' => 'fve', 'FvH4_5g13531' => 'fve', 'FvH4_5g13532' => 'fve', 'FvH4_5g13550' => 'fve', 'FvH4_5g13560' => 'fve', 'FvH4_5g28720' => 'fve', 'FvH4_6g46460' => 'fve', 'FvH4_6g46470' => 'fve', 'FvH4_6g46530' => 'fve', 'Glyma.02G196100' => 'gma', 'Glyma.04G006100' => 'gma', 'Glyma.04G160000' => 'gma', 'Glyma.04G160100' => 'gma', 'Glyma.05G019101' => 'gma', 'Glyma.06G005800' => 'gma', 'Glyma.06G205400' => 'gma', 'Glyma.06G205500' => 'gma', 'Glyma.08G249700' => 'gma', 'Glyma.08G249800' => 'gma', 'Glyma.13G053200' => 'gma', 'Glyma.13G053300' => 'gma', 'Glyma.17G080600' => 'gma', 'Glyma.18G271900' => 'gma', 'Glyma.18G272000' => 'gma', 'Glyma.18G272100' => 'gma', 'Glyma.19G033500' => 'gma', 'Glyma.19G033600' => 'gma', 'Gohir.A01G005300' => 'ghi', 'Gohir.A03G071000' => 'ghi', 'Gohir.A03G071100' => 'ghi', 'Gohir.A07G067400' => 'ghi', 'Gohir.A07G180900' => 'ghi', 'Gohir.A08G051900' => 'ghi', 'Gohir.A11G159360' => 'ghi', 'Gohir.A11G159400' => 'ghi', 'Gohir.A12G027300' => 'ghi', 'Gohir.A12G039850' => 'ghi', 'Gohir.A12G183700' => 'ghi', 'Gohir.A12G183800' => 'ghi', 'Gohir.A13G036600' => 'ghi', 'Gohir.D01G005400' => 'ghi', 'Gohir.D03G097400' => 'ghi', 'Gohir.D03G097600' => 'ghi', 'Gohir.D07G072000' => 'ghi', 'Gohir.D07G187400' => 'ghi', 'Gohir.D08G061600' => 'ghi', 'Gohir.D08G061633' => 'ghi', 'Gohir.D11G165400' => 'ghi', 'Gohir.D11G165500' => 'ghi', 'Gohir.D12G026766' => 'ghi', 'Gohir.D12G032500' => 'ghi', 'Gohir.D12G186700' => 'ghi', 'Gohir.D12G186750' => 'ghi', 'Gohir.D13G034900' => 'ghi', 'Gorai.001G076200' => 'gra', 'Gorai.001G208300' => 'gra', 'Gorai.002G006300' => 'gra', 'Gorai.003G102500' => 'gra', 'Gorai.003G102700' => 'gra', 'Gorai.004G063600' => 'gra', 'Gorai.007G176300' => 'gra', 'Gorai.007G176400' => 'gra', 'Gorai.008G027100' => 'gra', 'Gorai.008G033200' => 'gra', 'Gorai.008G200000' => 'gra', 'Gorai.008G200100' => 'gra', 'Gorai.013G039400' => 'gra', 'GSVIVG01008128001' => 'vvi', 'GSVIVG01008129001' => 'vvi', 'GSVIVG01008130001' => 'vvi', 'GSVIVG01023291001' => 'vvi', 'GSVIVG01024110001' => 'vvi', 'GSVIVG01024111001' => 'vvi', 'GSVIVG01036565001' => 'vvi', 'GSVIVG01036566001' => 'vvi', 'HanXRQChr02g0041431' => 'han', 'HanXRQChr04g0110081' => 'han', 'HanXRQChr07g0200351' => 'han', 'HanXRQChr07g0200361' => 'han', 'HanXRQChr07g0200371' => 'han', 'HanXRQChr09g0264891' => 'han', 'HanXRQChr10g0291041' => 'han', 'HanXRQChr14g0448161' => 'han', 'HanXRQChr15g0488991' => 'han', 'HanXRQChr15g0489001' => 'han', 'Haze_01817' => 'cav', 'Haze_02207' => 'cav', 'Haze_07751' => 'cav', 'Haze_07752' => 'cav', 'Haze_14395' => 'cav', 'Haze_14396' => 'cav', 'Hma1.2p1_0060F.1_g032850' => 'hma', 'Hma1.2p1_0069F.1_g037430' => 'hma', 'Hma1.2p1_0074F.1_g039090' => 'hma', 'Hma1.2p1_0468F.1_g158740' => 'hma', 'Hma1.2p1_0860F.1_g229560' => 'hma', 'Hma1.2p1_1385F.1_g279650' => 'hma', 'Hma1.2p1_1555F.1_g290530' => 'hma', 'Hma1.2p1_1555F.1_g290540' => 'hma', 'Hma1.2p1_2026F.1_g311570' => 'hma', 'Hma1.2p1_2026F.1_g311580' => 'hma', 'HPP92_007840' => 'vpl', 'HPP92_007841' => 'vpl', 'HPP92_022348' => 'vpl', 'HPP92_022349' => 'vpl', 'HPP92_022350' => 'vpl', 'Hund02564' => 'sun', 'Hund06462' => 'sun', 'Hund13684' => 'sun', 'Hund16218' => 'sun', 'Hund16219' => 'sun', 'Hund28653' => 'sun', 'Hund28654' => 'sun', 'Lalb_Chr02g0158691' => 'lal', 'Lalb_Chr02g0158701' => 'lal', 'Lalb_Chr10g0092781' => 'lal', 'Lalb_Chr11g0071741' => 'lal', 'Lalb_Chr17g0336841' => 'lal', 'Lalb_Chr17g0336851' => 'lal', 'Lalb_Chr18g0061011' => 'lal', 'Lalb_Chr21g0318181' => 'lal', 'Lalb_Chr21g0318191' => 'lal', 'Lalb_Chr23g0273951' => 'lal', 'Lj1g0002249' => 'lja', 'Lj1g0009054' => 'lja', 'Lj1g0011062' => 'lja', 'Lj1g0013220' => 'lja', 'Lj1g0015117' => 'lja', 'Lj1g0017312' => 'lja', 'Lj1g0026302' => 'lja', 'Lj2g0012714' => 'lja', 'Lj2g0019526' => 'lja', 'Lj2g0024823' => 'lja', 'Lj4A121G74' => 'lonja', 'Lj5A135T37' => 'lonja', 'Lj5A185T61' => 'lonja', 'Lj5C255T23' => 'lonja', 'Lj5P269T16' => 'lonja', 'Lj6g0005473' => 'lja', 'Lj6g0005953' => 'lja', 'Lj6g0026811' => 'lja', 'Lj9A389T68' => 'lonja', 'Lj9A439T47' => 'lonja', 'Lju361A4T49' => 'lonja', 'Lju361C2T0' => 'lonja', 'Lju361C4T12' => 'lonja', 'Lju361P1T3' => 'lonja', 'Lsat_1_v5_gn_1_14580' => 'lsa', 'Lsat_1_v5_gn_1_14620' => 'lsa', 'Lsat_1_v5_gn_2_89561' => 'lsa', 'Lsat_1_v5_gn_2_89601' => 'lsa', 'Lsat_1_v5_gn_4_173220' => 'lsa', 'Lsat_1_v5_gn_4_173241' => 'lsa', 'Lsat_1_v5_gn_9_119861' => 'lsa', 'Manes.02G058100' => 'mes', 'Manes.02G058200' => 'mes', 'Manes.06G082300' => 'mes', 'Manes.06G082400' => 'mes', 'Manes.06G082500' => 'mes', 'Manes.07G021200' => 'mes', 'Manes.11G089400' => 'mes', 'Manes.14G087750' => 'mes', 'Manes.14G087800' => 'mes', 'Mapoly0057s0007' => 'mpo', 'MBI03_g28292_MAGBIO' => 'mbi', 'MBI05_g30741_MAGBIO' => 'mbi', 'MBI16_g03091_MAGBIO' => 'mbi', 'MBI16_g03092_MAGBIO' => 'mbi', 'MBI16_g03093_MAGBIO' => 'mbi', 'MBI19_g06125_MAGBIO' => 'mbi', 'MD05G1114600' => 'mdo', 'MD06G1203700' => 'mdo', 'MD06G1203800' => 'mdo', 'MD08G1239300' => 'mdo', 'MD09G1072800' => 'mdo', 'MD09G1072900' => 'mdo', 'MD14G1214800' => 'mdo', 'MD14G1214900' => 'mdo', 'MD14G1215000' => 'mdo', 'MD15G1430900' => 'mdo', 'MD17G1064200' => 'mdo', 'MD17G1064300' => 'mdo', 'Medtr2g059310' => 'mtr', 'Medtr2g059320' => 'mtr', 'Medtr2g104890' => 'mtr', 'Medtr2g462000' => 'mtr', 'Medtr2g462010' => 'mtr', 'Medtr3g117690' => 'mtr', 'Medtr6g015865' => 'mtr', 'Medtr6g015875' => 'mtr', 'Medtr6g015880' => 'mtr', 'Medtr7g015950' => 'mtr', 'Medtr7g015960' => 'mtr', 'MELO3C002046.2' => 'cme', 'MELO3C017242.2' => 'cme', 'MELO3C017243.2' => 'cme', 'MELO3C019428.2' => 'cme', 'MELO3C026306.2' => 'cme', 'MELO3C026307.2' => 'cme', 'MELO3C029039.2' => 'cme', 'Migut.B00136' => 'egut', 'Migut.B00806' => 'egut', 'Migut.D01624' => 'egut', 'Migut.H00599' => 'egut', 'Migut.H00600' => 'egut', 'Migut.H00601' => 'egut', 'Migut.H00603' => 'egut', 'Migut.O00386' => 'egut', 'Migut.O00387' => 'egut', 'MSTRG.15439' => 'ama', 'MSTRG.23865' => 'ama', 'MSTRG.2981' => 'ama', 'MSTRG.2982' => 'ama', 'MSTRG.3369' => 'ama', 'MSTRG.3370' => 'ama', 'MSTRG.4490' => 'ama', 'MSTRG.9590' => 'ama', 'Nitab4.5_0000154g0250' => 'nta', 'Nitab4.5_0000154g0270' => 'nta', 'Nitab4.5_0000212g0310' => 'nta', 'Nitab4.5_0000283g0210' => 'nta', 'Nitab4.5_0000283g0250' => 'nta', 'Nitab4.5_0000939g0030' => 'nta', 'Nitab4.5_0000939g0060' => 'nta', 'Nitab4.5_0000948g0230' => 'nta', 'Nitab4.5_0000980g0340' => 'nta', 'Nitab4.5_0001151g0110' => 'nta', 'Nitab4.5_0001151g0140' => 'nta', 'Nitab4.5_0001434g0010' => 'nta', 'Nitab4.5_0002698g0050' => 'nta', 'Nitab4.5_0003403g0030' => 'nta', 'Nitab4.5_0003441g0140' => 'nta', 'Nitab4.5_0005120g0040' => 'nta', 'Nitab4.5_0005120g0100' => 'nta', 'Nitab4.5_0012631g0010' => 'nta', 'Nitab4.5_0012631g0020' => 'nta', 'Nitab4.5_0012805g0010' => 'nta', 'Nitab4.5_0012805g0020' => 'nta', 'Nitab4.5_0012805g0030' => 'nta', 'Nn3g17496' => 'nnu', 'Nn3g17497' => 'nnu', 'Nn4g23485' => 'nnu', 'Nn4g23488' => 'nnu', 'Nn5g27576' => 'nnu', 'Oeu004421.1' => 'oeu', 'Oeu007075.1' => 'oeu', 'Oeu010055.1' => 'oeu', 'Oeu014256.1' => 'oeu', 'Oeu014543.1' => 'oeu', 'Oeu033403.1' => 'oeu', 'Oeu051027.1' => 'oeu', 'Oeu055644.1' => 'oeu', 'Oeu057210.1' => 'oeu', 'Os03g0416200' => 'osa', 'Os03g0416300' => 'osa', 'Os03g0754500' => 'osa', 'Os04g0540300' => 'osa', 'Os05g0386800' => 'osa', 'Os07g0604300' => 'osa', 'Os07g0604400' => 'osa', 'Os10g0497700' => 'osa', 'Peaxi162Scf00011g00741' => 'pax', 'Peaxi162Scf00166g00328' => 'pax', 'Peaxi162Scf00166g00335' => 'pax', 'Peaxi162Scf00201g00415' => 'pax', 'Peaxi162Scf00201g00425' => 'pax', 'Peaxi162Scf00362g01040' => 'pax', 'Peaxi162Scf00365g00913' => 'pax', 'Peaxi162Scf00365g00937' => 'pax', 'Peaxi162Scf01524g00007' => 'pax', 'PGR031G2242' => 'pgr', 'PGR042G1836' => 'pgr', 'PGR042G3009' => 'pgr', 'PGR044G1428' => 'pgr', 'PGR044G1780' => 'pgr', 'PGR044G2507' => 'pgr', 'PGR083G0818' => 'pgr', 'PGR142G0114' => 'pgr', 'PGR142G4327' => 'pgr', 'PGSC0003DMG400001027' => 'stu', 'PGSC0003DMG400001031' => 'stu', 'PGSC0003DMG400001371' => 'stu', 'PGSC0003DMG400001465' => 'stu', 'PGSC0003DMG400001637' => 'stu', 'PGSC0003DMG400024530' => 'stu', 'PGSC0003DMG400024628' => 'stu', 'PGSC0003DMG400026565' => 'stu', 'PGSC0003DMG400031567' => 'stu', 'PGSC0003DMG400032772' => 'stu', 'Phvul.003G183000' => 'pvu', 'Phvul.004G041300' => 'pvu', 'Phvul.004G041400' => 'pvu', 'Phvul.006G217400' => 'pvu', 'Phvul.008G029000' => 'pvu', 'Phvul.008G029100' => 'pvu', 'Phvul.008G029200' => 'pvu', 'Phvul.009G000800' => 'pvu', 'Phvul.009G203100' => 'pvu', 'Phvul.009G203200' => 'pvu', 'Potri.004G117100' => 'ptr', 'Potri.004G117200' => 'ptr', 'Potri.004G167100' => 'ptr', 'Potri.004G219200' => 'ptr', 'Potri.012G062200' => 'ptr', 'Potri.015G060000' => 'ptr', 'Potri.015G060100' => 'ptr', 'Potri.015G060200' => 'ptr', 'Potri.017G098600' => 'ptr', 'Potri.017G098700' => 'ptr', 'Pp3c12_4550' => 'ppa', 'Pp3c15_18450' => 'ppa', 'Pp3c20_16270' => 'ppa', 'Pp3c2_9820' => 'ppa', 'Prupe.1G575900' => 'ppe', 'Prupe.3G250300' => 'ppe', 'Prupe.3G250400' => 'ppe', 'Prupe.3G250500' => 'ppe', 'Prupe.5G207800' => 'ppe', 'Prupe.5G207900' => 'ppe', 'Prupe.5G208000' => 'ppe', 'Prupe.5G208100' => 'ppe', 'Prupe.8G159300' => 'ppe', 'Psat0s4139g0040' => 'psa', 'Psat1g065960' => 'psa', 'Psat1g066480' => 'psa', 'Psat1g128440' => 'psa', 'Psat1g128480' => 'psa', 'Psat1g128520' => 'psa', 'Psat3g204320' => 'psa', 'Psat3g204360' => 'psa', 'Psat5g003400' => 'psa', 'PSO017G0257' => 'pso', 'PSO017G2673' => 'pso', 'PSO017G3136' => 'pso', 'PSO135G0541' => 'pso', 'PSO170G3354' => 'pso', 'PSO170G3480' => 'pso', 'PSO210G4570' => 'pso', 'PSO478G0682' => 'pso', 'PSO478G1120' => 'pso', 'PSO478G3838' => 'pso', 'PSO478G4881' => 'pso', 'PSO782G3346' => 'pso', 'PSO782G5416' => 'pso', 'QL02p066275' => 'qlo', 'QL02p066280' => 'qlo', 'QL02p099849' => 'qlo', 'QL05p083493' => 'qlo', 'QL05p083500' => 'qlo', 'QL09p001366' => 'qlo', 'QL10p020183' => 'qlo', 'QL10p020186' => 'qlo', 'QL10p020192' => 'qlo', 'QL11p047423' => 'qlo', 'QL93p0310_0008' => 'qlo', 'RcHm_v2.0_Chr2g0130081' => 'rch', 'RcHm_v2.0_Chr2g0130351' => 'rch', 'RcHm_v2.0_Chr2g0130691' => 'rch', 'RcHm_v2.0_Chr2g0165011' => 'rch', 'RcHm_v2.0_Chr2g0165021' => 'rch', 'RcHm_v2.0_Chr2g0165171' => 'rch', 'RcHm_v2.0_Chr5g0059971' => 'rch', 'RcHm_v2.0_Chr5g0059981' => 'rch', 'RcHm_v2.0_Chr6g0245661' => 'rch', 'RcHm_v2.0_Chr7g0182411' => 'rch', 'RcHm_v2.0_Chr7g0183381' => 'rch', 'RcHm_v2.0_Chr7g0183391' => 'rch', 'RcHm_v2.0_Chr7g0183431' => 'rch', 'RcHm_v2.0_Chr7g0183441' => 'rch', 'RcHm_v2.0_Chr7g0220881' => 'rch', 'Rhsim08G0076100' => 'rsi', 'Rhsim08G0166200' => 'rsi', 'Rhsim08G0166300' => 'rsi', 'Rhsim10G0055500' => 'rsi', 'Rhsim10G0055600' => 'rsi', 'Rhsim11G0126400' => 'rsi', 'RhsimUnG0234200' => 'rsi', 'RhsimUnG0234300' => 'rsi', 'Sabra01G0166300' => 'sbr', 'Sabra04G0070500' => 'sbr', 'Sabra04G0070600' => 'sbr', 'Sabra15G0085300' => 'sbr', 'Sabra15G0085400' => 'sbr', 'Sabra15G0085500' => 'sbr', 'Sabra17G0085000' => 'sbr', 'SalBow1G0956' => 'sbo', 'SalBow1G4851' => 'sbo', 'SalBow1G5737' => 'sbo', 'SalBow1G7275' => 'sbo', 'SalBow5G1435' => 'sbo', 'SalBow5G5219' => 'sbo', 'SalBow7G1189' => 'sbo', 'SalBow7G3241' => 'sbo', 'Sc03g0011460' => 'sci', 'Sc04g0004250' => 'sci', 'Sc04g0004260' => 'sci', 'Sc10g0000670' => 'sci', 'Sc11g0008740' => 'sci', 'Sc12g0007320' => 'sci', 'Sed0010385' => 'sed', 'Sed0011397' => 'sed', 'Sed0012059' => 'sed', 'Sed0012827' => 'sed', 'Sed0017468' => 'sed', 'Sed0018378' => 'sed', 'Sed0022913' => 'sed', 'Sed0026561' => 'sed', 'SEGI_04088' => 'sgi', 'SEGI_30228' => 'sgi', 'SEGI_36514' => 'sgi', 'SGA_v2.0_scaffold148G36430' => 'sas', 'SGA_v2.0_scaffold154G37125' => 'sas', 'SGA_v2.0_scaffold42G16041' => 'sas', 'SGA_v2.0_scaffold52G19116' => 'sas', 'SGA_v2.0_scaffold52G19118' => 'sas', 'SGA_v2.0_scaffold92G28307' => 'sas', 'SHI04843' => 'shi', 'SHI06688' => 'shi', 'SMO171G0039' => 'smo', 'SMO331G0085' => 'smo', 'SMO356G0396' => 'smo', 'Solyc01g103860.4' => 'sly', 'Solyc01g103877.1' => 'sly', 'Solyc01g111050.4' => 'sly', 'Solyc02g064790.1' => 'sly', 'Solyc02g065765.1' => 'sly', 'Solyc02g089120.4' => 'sly', 'Solyc02g089130.4' => 'sly', 'Solyc03g070440.4' => 'sly', 'Solyc03g070450.1' => 'sly', 'Solyc03g070460.1' => 'sly', 'Solyc03g114880.3' => 'sly', 'Solyc03g114890.4' => 'sly', 'Solyc03g114900.3' => 'sly', 'Solyc03g114910.4' => 'sly', 'Sopen01g046240' => 'spe', 'Sopen01g046270' => 'spe', 'Sopen01g053110' => 'spe', 'Sopen02g014890' => 'spe', 'Sopen02g015980' => 'spe', 'Sopen02g033910' => 'spe', 'Sopen02g033920' => 'spe', 'Sopen03g019240' => 'spe', 'Sopen03g033960' => 'spe', 'Sopen03g033970' => 'spe', 'Sopen03g033980' => 'spe', 'Sopen03g033990' => 'spe', 'Sp1g08380' => 'spa', 'Sp2g18070' => 'spa', 'Sp2g24230' => 'spa', 'Sp3g01280' => 'spa', 'Sp6g28480' => 'spa', 'TAR371G0859' => 'tar', 'TAR381G0998' => 'tar', 'TAR622G1167' => 'tar', 'TAR625G0482' => 'tar', 'TAR625G0577' => 'tar', 'TAR625G0624' => 'tar', 'TAR625G0752' => 'tar', 'TAR625G1325' => 'tar', 'TAR625G1375' => 'tar', 'TAR625G1403' => 'tar', 'TAR628G0289' => 'tar', 'TAR629G1899' => 'tar', 'TAR629G2835' => 'tar', 'TAR629G3379' => 'tar', 'THA.LOC104801082' => 'tha', 'THA.LOC104801092' => 'tha', 'THA.LOC104802979' => 'tha', 'THA.LOC104805521' => 'tha', 'THA.LOC104818353' => 'tha', 'THA.LOC104820208' => 'tha', 'THA.LOC104820989' => 'tha', 'THA.LOC104822322' => 'tha', 'THA.LOC104822325' => 'tha', 'Thecc.02G068200' => 'tca', 'Thecc.02G090700' => 'tca', 'Thecc.03G104900' => 'tca', 'Thecc.03G105000' => 'tca', 'Thecc.03G105200' => 'tca', 'Thecc.03G105300' => 'tca', 'Thecc.03G105400' => 'tca', 'Thecc.04G104000' => 'tca', 'Thecc.04G104100' => 'tca', 'Thecc.07G005900' => 'tca', 'Thecc.K0006000' => 'tca', 'Thecc.K0006200' => 'tca', 'Thhalv10004178m.g' => 'esa', 'Thhalv10004232m.g' => 'esa', 'Thhalv10004931m.g' => 'esa', 'Thhalv10007643m.g' => 'esa', 'Thhalv10013604m.g' => 'esa', 'Thhalv10020716m.g' => 'esa', 'TPR.G14353' => 'tpr', 'TPR.G14355' => 'tpr', 'TPR.G18771' => 'tpr', 'TPR.G2108' => 'tpr', 'TPR.G23388' => 'tpr', 'TPR.G23392' => 'tpr', 'TPR.G23429' => 'tpr', 'TPR.G30757' => 'tpr', 'TPR.G33618' => 'tpr', 'TPR.G38469' => 'tpr', 'TPR.G4296' => 'tpr', 'TPR.G4304' => 'tpr', 'TPR.G4328' => 'tpr', 'TWI15G0200' => 'twi', 'TWI15G0855' => 'twi', 'TWI32G0175' => 'twi', 'TWI38G2163' => 'twi', 'TWI60G0388' => 'twi', 'TWI60G0587' => 'twi', 'TWI60G1072' => 'twi', 'TWI60G1698' => 'twi', 'TWI79G0525' => 'twi', 'TWI81G0063' => 'twi', 'TWI81G0581' => 'twi', 'unitig_22.g6634' => 'ugi', 'unitig_26.g8986' => 'ugi', 'unitig_32.g10757' => 'ugi', 'unitig_32.g11766' => 'ugi', 'unitig_32.g11767' => 'ugi', 'unitig_748.g8417' => 'ugi', 'unitig_748.g8418' => 'ugi', 'vmacro01734' => 'vma', 'vmacro05621' => 'vma', 'vmacro05622' => 'vma', 'vmacro17628' => 'vma', 'vmacro17629' => 'vma', 'vmacro18136' => 'vma', 'VMungo0464G0462' => 'vmu', 'VMungo0464G0702' => 'vmu', 'VMungo0540G1257' => 'vmu', 'VMungo1215G3268' => 'vmu', 'VMungo1309G1670' => 'vmu', 'VMungo1309G2096' => 'vmu', 'VMungo1309G2848' => 'vmu', 'VMungo1383G0644' => 'vmu', 'VMungo1383G1844' => 'vmu', 'VMungo1383G3698' => 'vmu', 'Zm00001eb035300' => 'zma', 'Zm00001eb057580' => 'zma', 'Zm00001eb075290' => 'zma', 'Zm00001eb214720' => 'zma', 'Zm00001eb326990' => 'zma', 'Zm00001eb327000' => 'zma', 'Zm00001eb393070' => 'zma' ) $gf_id = 'HOM05D000600' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000600' ) $data_identifier = 'HOM05D000600' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 21, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 14, 'bca' => (int) 21, 'bol' => (int) 18, 'bra' => (int) 13, 'can' => (int) 18, 'cansat' => (int) 9, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 9, 'cpa' => (int) 6, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 10, 'fan' => (int) 36, 'fve' => (int) 11, 'gma' => (int) 18, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 13, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 9, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 13, 'qlo' => (int) 11, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 14, 'tha' => (int) 9, 'tca' => (int) 12, 'esa' => (int) 6, 'tpr' => (int) 13, 'twi' => (int) 11, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 10, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb393070' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1